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2006 Yamaha FJR1300AE

Owner reports · Recalls · Investigations

Limited comparison data

There is not enough comparable history to draw a useful model-year comparison.

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Counts vary with age, sales and reporting. They are not failure rates.

What owners reported most

Tap a category to read its complaints. One report may name several components.

When problems were reported

Mileage at the reported incident

Limited mileage data: 15 of 16 reports include usable mileage. There isn’t enough coverage to show a useful chart.

NHTSA’s mileage field refers to the reported incident, not necessarily the filing date. This shows report counts, not the likelihood of a failure.

What to inspect

Issues worth paying extra attention to based on owner reports.

  • Electrical System. Review the 13 owner reports in this category and discuss these concerns during a pre-purchase inspection. Read reports →
  • Engine And Engine Cooling. Review the 2 owner reports in this category and discuss these concerns during a pre-purchase inspection. Read reports →
  • Power Train. Review the 1 owner reports in this category and discuss these concerns during a pre-purchase inspection. Read reports →

NHTSA owner reports · September 18, 2026 snapshot.

0 crash reports0 fire reports0 injury reports

What owners actually said

16 reports
Mileage unknown · Oct 30, 2018
Power Train

I WAS WEST BOUND ON I80 ON MY YAMAHA FJR1300AE 2006 MOTORCYCLE ABOUT 10 MILES WEST OF JOLIET, IL. A WARNING LIGHT CAME ON "SHIFT SH46" AS I CONTINUED RIDING I ATTEMPTED TO SHIFT GEARS WITH THE PADDLE SHIFTER (ELECTRIC SHIFT). THE TRANSMISSION WOULD NOT SHIFT. I ATTEMPTED TO DOWN SHIFT USING THE FOOT OPERATED MANUAL SHIFT WITH TH…

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I WAS WEST BOUND ON I80 ON MY YAMAHA FJR1300AE 2006 MOTORCYCLE ABOUT 10 MILES WEST OF JOLIET, IL. A WARNING LIGHT CAME ON "SHIFT SH46" AS I CONTINUED RIDING I ATTEMPTED TO SHIFT GEARS WITH THE PADDLE SHIFTER (ELECTRIC SHIFT). THE TRANSMISSION WOULD NOT SHIFT. I ATTEMPTED TO DOWN SHIFT USING THE FOOT OPERATED MANUAL SHIFT WITH THE SAME RESULTS. THE TRANSMISSION WAS LOCKED IN 5TH GEAR. I PULLED OFF AN EXIT RAMP AT OTTAWA, IL AND THE ENGINE STOPPED OPERATING (STALLED). I TURNED OFF THE IGNITION AND MANUALLY PUT THE TRANSMISSION IN NEUTRAL. AFTER A COUPLE OF MINUTES I RESTARTED THE FJR1300AE MOTORCYCLE, AND CONTINUED TO MY DESTINATION. THE SAME INSTANCE OCCURRED ON 10/01/2018 ON I80 DURING THE RETURN TRIP FROM OTTAWA, IL. THE MOTORCYCLE WAS AGAIN LOCKED IN 5TH GEAR WITH THE SAME WARNING LIGHTS. THE MOTORCYCLE STALLED IN 5TH GEAR, AND I PERFORMED THE SAME TASKS AS BEFORE RESTARTED THE FJR1300AE CONTINUING ON TO MY DESTINATION. I HAVE NOT HAD A REOCCURRENCE SINCE 10/01/2018.

NHTSA ODI #11144145

9,554 miles · Jun 20, 2011
Electrical System

THE MOTORCYCLE'S ENGINE QUIT SUDDENLY WITHOUT WARNING. FROM THE ON-LINE FJR FORUM AND MY PERSONAL INSPECTIONS OF ELECTRICAL COMPONENTS IN MY BIKE, I HAVE DETERMINED THAT THIS WAS CAUSED BY THE WELL KNOWN YAMAHA FJR 1300 ELECTRICAL GROUNDING ISSUE. A RECALL BY YAMAHA IS NEEDED. THIS HAS BEEN A KNOWN FJR ISSUE FOR THREE YEARS.

NHTSA ODI #10408269

8,500 miles · Feb 4, 2011
Engine And Engine Cooling

YAMAHA FJR AE 2006. I PURCHASED THIS BIKE IN 2010 WITH ONLY 3500 MILES ON IT. RIDING WITH FRIENDS WE WERE ABOUT TO ENTER A MAJOR INTERSTATE HIGHWAY IN DALLAS, TX. UPON GIVING THE BIKE THROTTLE THE ENGINE SUDDENLY LOST ALL POWER AT ABOUT 50 MILES PER HOUR. THE SPEEDOMETER AND TACHOMETER WERE JUMPING FROM ZERO TO MAXIMUM SEVE…

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YAMAHA FJR AE 2006. I PURCHASED THIS BIKE IN 2010 WITH ONLY 3500 MILES ON IT. RIDING WITH FRIENDS WE WERE ABOUT TO ENTER A MAJOR INTERSTATE HIGHWAY IN DALLAS, TX. UPON GIVING THE BIKE THROTTLE THE ENGINE SUDDENLY LOST ALL POWER AT ABOUT 50 MILES PER HOUR. THE SPEEDOMETER AND TACHOMETER WERE JUMPING FROM ZERO TO MAXIMUM SEVERAL TIMES. I ALMOST LOST CONTROL AND OTHER BEHIND ME ALMOST CRASHED INTO ME FROM BEHIND. AS I BEGAN TO PULL OFF THE RAMP OUT OF THE WAY OF OTHER TRAFFIC SUDDENLY THE BIKE RESTARTED AND REGAINED POWER. IT HAS NOT DONE THIS AGAIN. WHEN I TOOK THE BIKE TO THE LOCAL YAMAHA DEALER THEY TOLD ME THERE WERE NO ACTIVE RECALLS ON THIS MODEL. NOW I FIND THAT INDEED THE IGNITION SWITCH HAS A SAFETY RECALL AND I'M QUITE SURE THIS IS THE PROBLEM. I WILL RETURN TO THE DEALER TO HAVE THE IGNITION RECALL COMPLETED. *TR

NHTSA ODI #10380775

25,090 miles · Jun 27, 2010
Electrical System

2006 YAMAHA FJR1300. VEHICLE WAS BEING RIDDING AND THE SPEEDOMETER STOPPED WORKING, ABS AND CHECK ENGINE LIGHTS STARTED FLASHING AND THE GEAR INDICATOR WAS ALSO FLASHING. THIS IS THE AE MODEL WITH ELECTRICAL SHIFTING. IT WAS STUCK IN 5TH GEAR AND WOULD NOT DOWN SHIFT. I WAS ABLE TO RETURN IT TO THE PARKING LOT IN HIGH GEAR AND T…

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2006 YAMAHA FJR1300. VEHICLE WAS BEING RIDDING AND THE SPEEDOMETER STOPPED WORKING, ABS AND CHECK ENGINE LIGHTS STARTED FLASHING AND THE GEAR INDICATOR WAS ALSO FLASHING. THIS IS THE AE MODEL WITH ELECTRICAL SHIFTING. IT WAS STUCK IN 5TH GEAR AND WOULD NOT DOWN SHIFT. I WAS ABLE TO RETURN IT TO THE PARKING LOT IN HIGH GEAR AND TURN OFF THE MOTOR. CALLED DEALER AND HE CLEANED A CORRODED GROUND SPIDER AND VEHICLE IS NOW OPERATING PROPERLY AGAIN. *TR

NHTSA ODI #10340268

24,350 miles · Feb 14, 2010
Electrical System

THERE WERE NO MEMORABLE EVENTS LEADING UP TO THE FAILURE. THERE ARE NO MODIFICATIONS TO THE MOTOR, ELECTRICAL, OR IGNITION SYSTEMS. ALL SYSTEMS REMAIN STOCK FROM THE DEALER/MANUFACTURER. THE MOTOR WAS CUTTING IN AND OUT LIKE THERE WAS AN ELECTRICAL INTERRUPTION. AT THE SAME TIME THAT THE MOTOR WAS CUTTING IN AND OUT, THE TUR…

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THERE WERE NO MEMORABLE EVENTS LEADING UP TO THE FAILURE. THERE ARE NO MODIFICATIONS TO THE MOTOR, ELECTRICAL, OR IGNITION SYSTEMS. ALL SYSTEMS REMAIN STOCK FROM THE DEALER/MANUFACTURER. THE MOTOR WAS CUTTING IN AND OUT LIKE THERE WAS AN ELECTRICAL INTERRUPTION. AT THE SAME TIME THAT THE MOTOR WAS CUTTING IN AND OUT, THE TURN SIGNALS AND HIGH BEAMS INDICATOR WOULD TURN ON FOR AS LONG AS THE MOTOR WAS CUTTING IN AND OUT, WHICH WAS VERY FAST (EXAMPLE: .5 SECOND). THIS CONDITION CONTINUED FOR 3 MONTHS WITH NO REGULARITY. THE COMPLETE FAILURE FINALLY OCCURRED WHILE TRAVELING HOME FROM WORK ON THE FREEWAY. I WAS ABLE TO SAFELY GET TO THE SIDE OF THE ROAD, BUT WAS UNABLE TO GET THE MOTOR STARTED. I HAD TO CALL A TOW TRUCK AND PAY TO HAVE THE VEHICLE TOWED TO MY RESIDENCE. FOUND AN ELECTRICAL CONNECTOR (KNOWN AS S4 SPIDER GROUND) THAT SERVES AS A COMMON GROUND TO 5 OTHER ELECTRICAL WIRES WAS MELTED, LIKE IT WAS OVER HEATING FROM INSIDE THE CONNECTOR. THIS CONNECTOR DOES NOT CONTACT ANY HOT SURFACES. I CLEANED THE CONNECTOR WITH ELECTRICAL CONTACT CLEANER. I PICKED OUT THE MELTED PLASTIC THAT WAS BLOCKING THE CONNECTOR HOLES. I ALSO CLEANED OFF THE CONNECTOR PLUG THAT CONNECTS ALL THE ELECTRICAL CONNECTOR TERMINALS TOGETHER DUE TO CORROSION AND MELTED PLASTIC STUCK TO IT. FINALLY, I APPLIED DIE-ELECTRIC GREASE TO THE CONNECTORS TO REDUCE CORROSION AND IMPROVE THE CONNECTION BETWEEN THE CONNECTORS AND THE CONNECTOR PLUG. I COULD NOT REPLACE THE CONNECTOR WITHOUT REPLACING THE ENTIRE HEAD LIGHT ELECTRICAL HARNESS. THIS FIX LASTED FOR 1 YEAR BEFORE FAILING AGAIN. I DID THE SAME CLEANING AS I HAD MENTIONED ABOVE, BUT IT FAILED AGAIN AFTER 2 MONTHS. I THEN SOLDERED 2 SEPARATE WIRES TO THE TOP OF THE 6 PRONG CONNECTOR AND ATTACHED THOSE WIRES TO TWO DIFFERENT POINTS ON THE VEHICLE. THE LAST FIX HAS LASTED 11 MONTHS WITH NO MORE EVIDENCE OF OVERHEATING TO THE S4 GROUNDING PLUG. THERE HAS NOT BEEN ANY MORE ENGINE CUTTING IN AND OUT SYMPTOMS EITHER. *TR

NHTSA ODI #10310359

20,912 miles · Jan 19, 2010
Electrical System

2006 YAMAHA FJR1300AE WITH 20,000 MILES. LEFT ME STRANDED WHEN IT SUDDENLY WOULD NOT START. SYMPTOMS INCLUDED: 1.THE FUEL GAUGE BAR DISPLAY SHOWS A FULL TANK AND THE WHOLE BAR DISPLAY IS BLINKING ON AND OFF. 2. HORN WON'T WORK 3. THE HEADLIGHT HIGH BEAM INDICATOR IS ON, ALTHOUGH THE HEADLIGHT IS NOT ON AND SWITCH IS IN THE L…

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2006 YAMAHA FJR1300AE WITH 20,000 MILES. LEFT ME STRANDED WHEN IT SUDDENLY WOULD NOT START. SYMPTOMS INCLUDED: 1.THE FUEL GAUGE BAR DISPLAY SHOWS A FULL TANK AND THE WHOLE BAR DISPLAY IS BLINKING ON AND OFF. 2. HORN WON'T WORK 3. THE HEADLIGHT HIGH BEAM INDICATOR IS ON, ALTHOUGH THE HEADLIGHT IS NOT ON AND SWITCH IS IN THE LOW POSITION 4. BOTH TURN SIGNAL INDICATORS ARE STEADY ON 5. NO ERROR CODES 6. NEUTRAL INDICATOR IS ON THIS IS A MOTORCYCLE WITHA COMPUTERIZED CLUTCH - SO NO MANUAL SHIFT. WHEN IT IS DEAD THERE IS NO MOVING IT. TOWED TO MY MECHANIC WHO DISCOVERED A MELTED GROUND JUNCTION IN THE MAIN ELECTRICAL HARNESS UNDER THE FUEL TANK. REPLACED BOTH UPPER AND LOWER HARNESSES AT A COST OF OVER $1000. *TR

NHTSA ODI #10300368

26,000 miles · Jan 13, 2010
Electrical System

THIS IS ON A 2006 YAMAHA FJR1300AE MODEL MOTORCYCLE WITH ABOUT 26K MILES ON IT. I STARTED THE MOTORCYCLE, IT RAN FOR ABOUT 1 TO 2 SECONDS THEN SHUTDOWN AND WOULD NOT RESTART. THIS WAS THE FIRST AND ONLY OCCURRENCE. UPON INSPECTION BY AN AUTHORIZED DEALERSHIP SERVICE TECHNICIAN IT WAS FOUND TO HAVE AN OVERHEATED, MELTED GROUND…

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THIS IS ON A 2006 YAMAHA FJR1300AE MODEL MOTORCYCLE WITH ABOUT 26K MILES ON IT. I STARTED THE MOTORCYCLE, IT RAN FOR ABOUT 1 TO 2 SECONDS THEN SHUTDOWN AND WOULD NOT RESTART. THIS WAS THE FIRST AND ONLY OCCURRENCE. UPON INSPECTION BY AN AUTHORIZED DEALERSHIP SERVICE TECHNICIAN IT WAS FOUND TO HAVE AN OVERHEATED, MELTED GROUND JUNCTION IN THE MAIN ELECTRICAL HARNESS. THE MANUFACTURER IS GOING TO REPLACE THE ENTIRE MAIN HARNESS UNDER THE EXTENDED WARRANTY I HAVE. THE OLD HARNESS IS BEING SENT BACK TO THE OEM FOR INSPECTION. IT IS MY UNDERSTANDING FROM MONITORING CERTAIN INTERNET FORUMS FOR THIS MACHINE THAT OTHER OWNERS ARE HAVING IDENTICAL FAILURES. INASMUCH AS THIS DEFECT CAN CAUSE THE MOTORCYCLE ENGINE TO SUDDENLY STOP RUNNING, THERE IS THE POTENTIAL FOR A SERIOUS OR FATAL CRASH INJURY. *TR

NHTSA ODI #10299664

32,000 miles · Jan 4, 2010
Electrical System

2006 YAMAHA FJR 1300 AE MOTORCYCLE. *TR

NHTSA ODI #10298026

15,000 miles · Aug 26, 2008
Electrical System

IGNITION SWITCH FAILED WHEN IN MOTION. THIS IS AN INTERMITTENT PROBLEM AND CAUSES THE MOTORCYCLE TO LOSE ALL POWER. DEALER REPLACED SWITCH. I'M REPORTING THIS SO THAT YOU CAN LEAN ON YAMAHA TO REPLACE ALL SWITCHES. *TR

NHTSA ODI #10239797

8,000 miles · Aug 13, 2008
Electrical System

WHILE PULLING INTO THE PARKING LOT OF WORK 2006 YAMAHA FJR1300AE JUST DIED. ALL POWER WAS LOST AND MOTOR JUST STOPPED. THE BIKE WAS COMPLETELY DEAD AND THE FAILURE WAS IN THE IGNITION SWITCH. IT TOOK OVER 2 WEEKS TO HAVE THE SWITCH REPLACED. *TR

NHTSA ODI #10238071

Official recalls

0

No recalls in this snapshot.

Model-level recall history does not show whether a particular VIN is affected or has received a repair. Check a VIN with NHTSA ↗

NHTSA investigations

2

EA08025 · Motorcycle Stalling - Electrical

Opened Nov 21, 2008 · Closed Jan 9, 2009

Status: closed (inferred from source dates) · Electrical System:ignition:switch

ODI IS AWARE OF AT LEAST 45 ALLEGATIONS OF FJR1300 ENGINE STALLING WHILE UNDERWAY DUE TO AN IGNITION SWITCH FAILURE.IN SOME INSTANCES, CYCLING THE SWITCH WILL ALLOW RE-START.FJRFORUM.COM HAS NUMEROUS THREADS ALLEGING THE SAME ISSUE.SHORTLY AFTER OPENING THIS EA, AND BEFORE RECEIVING A RELATED INFORMATION REQUEST FROM US, YAMAHA DECIDED TO CONDUCT A SAFETY RECALL (09V-002) TO INSTALL NEW IGNITION SWITCHES IN ALL MY 2006-8 AND EARLY MY 2009 FJR1300 MOTORCYCLES.WITH THAT DECISION, THIS INVESTIGATION IS CLOSED.

PE08048 · Motorcycle Stalling - Electrical

Opened Aug 8, 2008 · Closed Nov 21, 2008

Status: closed (inferred from source dates) · Electrical System:ignition:switch

ODI IS AWARE OF AT LEAST 45 ALLEGATIONS OF FJR1300 ENGINE STALLING WHILE UNDERWAY DUE TO AN IGNITION SWITCH FAILURE.IN SOME INSTANCES, CYCLING THE SWITCH WILL ALLOW RE-START.FJRFORUM.COM HAS NUMEROUS THREADS ALLEGING THE SAME ISSUE.TO GATHER MORE FOCUSED INFORMATION ABOUT THIS SUBJECT, WE ARE UPGRADING THIS PE TO AN EA (EA08-025).