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2006 Yamaha FJR1300AE

Owner reports · Recalls · Investigations

Limited comparison data

There is not enough comparable history to draw a useful model-year comparison.

About this comparison →
16Owner complaints

Model-year median: 16

0Recall campaigns

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2Investigations

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How this year compares

Owner complaints by model year

Other model years Selected year
16
2006
Compare all FJR1300AE years →

Counts vary with age, sales and reporting. They are not failure rates.

What owners reported most

Electrical System
13Engine And Engine Cooling
2Power Train
1

Tap a category to read its complaints. One report may name several components.

When problems were reported

Mileage at the reported incident

Limited mileage data: 15 of 16 reports include usable mileage. There isn’t enough coverage to show a useful chart.

NHTSA’s mileage field refers to the reported incident, not necessarily the filing date. This shows report counts, not the likelihood of a failure.

What to inspect

Issues worth paying extra attention to based on owner reports.

  • Electrical System. Review the 13 owner reports in this category and discuss these concerns during a pre-purchase inspection. Read reports →
  • Engine And Engine Cooling. Review the 2 owner reports in this category and discuss these concerns during a pre-purchase inspection. Read reports →
  • Power Train. Review the 1 owner reports in this category and discuss these concerns during a pre-purchase inspection. Read reports →

NHTSA owner reports · September 18, 2026 snapshot.

0 crash reports0 fire reports0 injury reports

Power Train complaints

1 reports
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Mileage unknown · Oct 30, 2018
Power Train

I WAS WEST BOUND ON I80 ON MY YAMAHA FJR1300AE 2006 MOTORCYCLE ABOUT 10 MILES WEST OF JOLIET, IL. A WARNING LIGHT CAME ON "SHIFT SH46" AS I CONTINUED RIDING I ATTEMPTED TO SHIFT GEARS WITH THE PADDLE SHIFTER (ELECTRIC SHIFT). THE TRANSMISSION WOULD NOT SHIFT. I ATTEMPTED TO DOWN SHIFT USING THE FOOT OPERATED MANUAL SHIFT WITH TH…

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I WAS WEST BOUND ON I80 ON MY YAMAHA FJR1300AE 2006 MOTORCYCLE ABOUT 10 MILES WEST OF JOLIET, IL. A WARNING LIGHT CAME ON "SHIFT SH46" AS I CONTINUED RIDING I ATTEMPTED TO SHIFT GEARS WITH THE PADDLE SHIFTER (ELECTRIC SHIFT). THE TRANSMISSION WOULD NOT SHIFT. I ATTEMPTED TO DOWN SHIFT USING THE FOOT OPERATED MANUAL SHIFT WITH THE SAME RESULTS. THE TRANSMISSION WAS LOCKED IN 5TH GEAR. I PULLED OFF AN EXIT RAMP AT OTTAWA, IL AND THE ENGINE STOPPED OPERATING (STALLED). I TURNED OFF THE IGNITION AND MANUALLY PUT THE TRANSMISSION IN NEUTRAL. AFTER A COUPLE OF MINUTES I RESTARTED THE FJR1300AE MOTORCYCLE, AND CONTINUED TO MY DESTINATION. THE SAME INSTANCE OCCURRED ON 10/01/2018 ON I80 DURING THE RETURN TRIP FROM OTTAWA, IL. THE MOTORCYCLE WAS AGAIN LOCKED IN 5TH GEAR WITH THE SAME WARNING LIGHTS. THE MOTORCYCLE STALLED IN 5TH GEAR, AND I PERFORMED THE SAME TASKS AS BEFORE RESTARTED THE FJR1300AE CONTINUING ON TO MY DESTINATION. I HAVE NOT HAD A REOCCURRENCE SINCE 10/01/2018.

NHTSA ODI #11144145

Official recalls

0

No recalls in this snapshot.

Model-level recall history does not show whether a particular VIN is affected or has received a repair. Check a VIN with NHTSA ↗

NHTSA investigations

2

EA08025 · Motorcycle Stalling - Electrical

Opened Nov 21, 2008 · Closed Jan 9, 2009

Status: closed (inferred from source dates) · Electrical System:ignition:switch

ODI IS AWARE OF AT LEAST 45 ALLEGATIONS OF FJR1300 ENGINE STALLING WHILE UNDERWAY DUE TO AN IGNITION SWITCH FAILURE.IN SOME INSTANCES, CYCLING THE SWITCH WILL ALLOW RE-START.FJRFORUM.COM HAS NUMEROUS THREADS ALLEGING THE SAME ISSUE.SHORTLY AFTER OPENING THIS EA, AND BEFORE RECEIVING A RELATED INFORMATION REQUEST FROM US, YAMAHA DECIDED TO CONDUCT A SAFETY RECALL (09V-002) TO INSTALL NEW IGNITION SWITCHES IN ALL MY 2006-8 AND EARLY MY 2009 FJR1300 MOTORCYCLES.WITH THAT DECISION, THIS INVESTIGATION IS CLOSED.

PE08048 · Motorcycle Stalling - Electrical

Opened Aug 8, 2008 · Closed Nov 21, 2008

Status: closed (inferred from source dates) · Electrical System:ignition:switch

ODI IS AWARE OF AT LEAST 45 ALLEGATIONS OF FJR1300 ENGINE STALLING WHILE UNDERWAY DUE TO AN IGNITION SWITCH FAILURE.IN SOME INSTANCES, CYCLING THE SWITCH WILL ALLOW RE-START.FJRFORUM.COM HAS NUMEROUS THREADS ALLEGING THE SAME ISSUE.TO GATHER MORE FOCUSED INFORMATION ABOUT THIS SUBJECT, WE ARE UPGRADING THIS PE TO AN EA (EA08-025).